30 lines
656 B
Makefile
30 lines
656 B
Makefile
PORTNAME= samtools
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DISTVERSION= 1.24
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CATEGORIES= biology
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MAINTAINER= jwb@FreeBSD.org
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COMMENT= Tools for manipulating next-generation sequencing data
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WWW= https://www.htslib.org/
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LICENSE= MIT
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LICENSE_FILE= ${WRKSRC}/LICENSE
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BUILD_DEPENDS= htslib>=1.24:biology/htslib
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LIB_DEPENDS= libhts.so:biology/htslib
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TEST_DEPENDS= bash:shells/bash
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USES= autoreconf cpe gmake localbase ncurses perl5 python:env shebangfix
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USE_GITHUB= yes
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USE_PERL5= test
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GNU_CONFIGURE= yes
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GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share
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SHEBANG_FILES= misc/*.pl misc/*.py misc/plot-bamstats test/test.pl
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CONFIGURE_ARGS= --with-htslib=system
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TEST_TARGET= test
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.include <bsd.port.mk>
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