52 lines
1.2 KiB
Makefile
52 lines
1.2 KiB
Makefile
PORTNAME= bowtie
|
|
DISTVERSIONPREFIX= v
|
|
DISTVERSION= 1.3.1
|
|
CATEGORIES= biology
|
|
|
|
MAINTAINER= jwb@FreeBSD.org
|
|
COMMENT= Ultrafast, memory-efficient short read aligner
|
|
WWW= https://bowtie-bio.sourceforge.net/index.shtml
|
|
|
|
LICENSE= ART10
|
|
|
|
ONLY_FOR_ARCHS= aarch64 amd64 powerpc64 powerpc64le riscv64
|
|
|
|
# c++11-lib is just for GCC 4.2-based systems
|
|
# Remove it when support officially ends
|
|
USES= compiler:c++11-lib gmake perl5 python:run shebangfix
|
|
USE_PERL5= run
|
|
USE_GITHUB= yes
|
|
|
|
SHEBANG_FILES= scripts/*.pl bowtie bowtie-build scripts/bowtie-hbb.sh \
|
|
bowtie-inspect
|
|
GH_ACCOUNT= BenLangmead
|
|
|
|
OPTIONS_DEFINE= DOCS
|
|
|
|
.include <bsd.port.options.mk>
|
|
|
|
.if ${ARCH:Mpowerpc64*} || ${ARCH} == aarch64 || ${ARCH:Mriscv64*}
|
|
MAKE_ENV= POPCNT_CAPABILITY=0
|
|
.endif
|
|
|
|
post-install:
|
|
${MKDIR} ${STAGEDIR}${DATADIR}/scripts
|
|
${INSTALL_SCRIPT} \
|
|
${WRKSRC}/bowtie \
|
|
${WRKSRC}/bowtie-build \
|
|
${WRKSRC}/bowtie-inspect \
|
|
${STAGEDIR}${PREFIX}/bin
|
|
${INSTALL_SCRIPT} \
|
|
${WRKSRC}/scripts/*.sh \
|
|
${WRKSRC}/scripts/*.pl \
|
|
${STAGEDIR}${DATADIR}/scripts
|
|
cd ${WRKSRC} && ${COPYTREE_SHARE} \
|
|
'genomes indexes reads' \
|
|
${STAGEDIR}${DATADIR}
|
|
cd ${WRKSRC}/doc && ${COPYTREE_SHARE} \
|
|
\* \
|
|
${STAGEDIR}${DOCSDIR}
|
|
${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/*-[sl]
|
|
|
|
.include <bsd.port.mk>
|