30 lines
956 B
Bash
30 lines
956 B
Bash
--- calcmem.sh.orig 2026-08-31 16:31:16 UTC
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+++ calcmem.sh
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@@ -144,26 +144,6 @@ setEnvironment(){
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if [[ "$SHIFTER_RUNTIME" = "1" ]]; then
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#Ignore NERSC_HOST
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shifter=1
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- elif [ -z "$EC2_HOME" ]; then
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- #Let's assume this is the AWS taxonomy server...
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- PATH=/test1/binaries/bgzip:$PATH
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- PATH=/test1/binaries/lbzip2/bin:$PATH
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- PATH=/test1/binaries/sambamba:$PATH
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- #PATH=/test1/binaries/java/jdk-11.0.2/bin:$PATH
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- PATH=/test1/binaries/pigz2/pigz-2.4:$PATH
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- elif [ -z "$NERSC_HOST" ]; then
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- #Not NERSC; do nothing
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- :
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- elif [ -z "$NERSC_HOST" ]; then
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- #Not NERSC; do nothing
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- :
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- else
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- PATH=/global/cfs/cdirs/bbtools/bgzip:$PATH
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- PATH=/global/cfs/cdirs/bbtools/lbzip2/bin:$PATH
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- PATH=/global/cfs/cdirs/bbtools/samtools116/samtools-1.16.1:$PATH
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- #PATH=/global/projectb/sandbox/gaag/bbtools/sambamba:$PATH
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- PATH=/global/cfs/cdirs/bbtools/java/jdk-17/bin:$PATH
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- PATH=/global/cfs/cdirs/bbtools/pigz2/pigz-2.4:$PATH
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fi
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}
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